Clinical Bioinformatician Sr

Clinical Bioinformatician Sr

Requirements

• Ph.D. in Bioinformatics, Statistics, Computer Science, data science or a related field and 3+ years of bioinformatics experience, OR
• Master’s degree with 5+ years of experience, OR
• Bachelor’s degree with 8+ years of experience.
• Experience with Linux-based or cloud computing environments.
• Proficiency in Python, R for developing somatic and germline analysis pipelines, with experience managing the codebase using Git.
• Proven experience in NGS data analysis, variant detection, and annotation.

Responsibilities

• Lead project management efforts, ensuring timely completion of goals and projects in alignment with strategic plans, and identify necessary resources for successful delivery.
• Conduct regular audits of bioinformatics processes to identify areas for improvement and ensure compliance with best practices and regulatory requirements.
• Implement and manage bioinformatics methodologies and pipelines for somatic and germline targeted genes sequencing, exhibiting good code and development practice.
• Analyze and interpret NGS data from various sequencing platforms (e.g., Illumina, Ion Torrent) for clinical applications such as hereditary disease diagnostics, cancer genomics, and solid tumor mutation detection.
• Hands-on design, develop, and optimize bioinformatics pipelines for tasks like variant calling, copy number variation (CNV) detection, structural variant analysis, and gene expression profiling.
• Work closely with clinical laboratory staff, pathologists, directors, and researchers to translate bioinformatics analyses into actionable clinical insights. Communicate complex bioinformatics concepts and results to non-technical stakeholders in a clear and effective manner.
• Assess data analysis workflows to identify opportunities for automation of analysis, reporting, and quality control (QC). Implement improvements in collaboration with laboratory leadership.
• Ensure all bioinformatics workflows and analyses comply with clinical laboratory regulations and standards (e.g., CLIA, CAP). Lead the validation and verification of bioinformatic systems, including modifications, upgrades, and other changes; develop and maintain documentation for bioinformatics processes.
• Develop and implement bioinformatics policies and practices that adhere to CLIA, CAP, CDC, OSHA, AABB, and FDA guidelines. Oversee CAP bioinformatics surveys and ensure compliance with CAP inspections. Monitor regulatory changes and update policies accordingly.
• Ensure the implementation of effective quality assurance and quality control programs, integrating with related committees and processes to maintain high standards.

Preferred Qualifications

• Experience with high-performance computing (HPC) and cloud platforms is preferred.
• Familiarity with cancer genomics, liquid biopsy, or hereditary disease testing preferred.
• Experience with machine learning applications in bioinformatics.